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I-MRNA-SEQ (NGS) ngereferensi ye-genome

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I-MRNA-SEQ (NGS) ngereferensi ye-genome

I-RNA-SEQ sisixhobo esisemgangathweni Kubomi bonke ubomi kunye neeSayensi zeZityalo, zivalela umsantsa phakathi kwe-genomes kunye neeprotene. Amandla ayo kulele ekufumaneni iincwadi ezintsha kunye nokutshintsha intetho yazo kwi-ASSEAY enye. Isetyenziselwa ngokubanzi izifundo zothutho othelekiso, ukuphalaza izibane ezinxulumene neempawu ezahlukeneyo okanye izinto eziphathekayo, njengokuthelekisa iintlobo ze-wild zasendle okanye ukuchaza intetho ephantsi kweemeko ezithile. I-BmKCHAUD MRNA (Reference) idibanisa ukuchaneka, uhlalutyo lwe-dege), icephu), kunye nokulandelelana kwabelwa i-pieline ye-bipeline kwaye iqinisekisa ukuba lula kunye nomhlobo. Abasebenzisi banokufaka idatha yabo ye-RNAQ kwilifu, apho i-APP ibonelela ngesisombululo sokuhlalutywa kwe-bioinformatic). Ukongeza, ibeka phambili amava abathengi, ukuhambisa imisebenzi eyenzelwe umntu olungiselelwe iimfuno zabasebenzisi. Abasebenzisi banokubeka iiparamitha kwaye bangenise i-pipeline ye-pipeline, jonga iNgxelo yokuSebenza, jonga idatha / imizobo kunye neMigodi yeDatha, ukuQeqeshelwa kwedatha, umzobo, ukuqhwalela okusebenzayo, umzobo, i-programs, njl.

Iziphumo
Imayini yedatha
Idinga lokungenisa
Uhlalutyo oluphambili
Ireferensi
Iziphumo

Imayini yedatha

Idinga lokungenisa

Iplatifomu:I-Mnumina, MGI
Isicwangciso:I-rna-seq
Ubume: I-Partied, idatha ecocekileyo.
Uhlobo lwethala leencwadi:I-Fr-engavuswanga, fr-rystrand okanye i-fr-frictrond
Funda ubude:I-150 BP
Uhlobo lwefayile:* .Ireq, * .FQ, * .Ireq.gz okanye * .Fq.gz. Inkqubo iyaBhalisa ngokuzenzekelayo iifayile ze-Umzekelo *
Inani leesampulu:Akukho zithintelo kwinaniIisampulu, kodwa ixesha lokuhlaziywa liya kunyuka njengenani leIisampulu ziyakhula.
Idatha yedatha ecetyiswayo:I-6G isampulu

Uhlalutyo oluphambili
Uhlalutyo oluphambili kunye nezixhobo ze-biineformatic ze-nunna-seq (ireferensi)I-Pipeline ngolu hlobo lulandelayo:
I-1. Ulawulo olusemgangathweni weRawdata:
• Ukususwa kokulandelelana komgangatho ophantsi, ulandelelwano lwe-adaptha,njl.
• izixhobo: I-In-ndlu ye-piholi,
2. Ukulungelelaniswa kwedatha kwireferensi ye-genome:
• Ukulungelelaniswa kokufunda nge-algorithm eyaziwayo ngokuchasene neIsalathiso se-genome.
• Izixhobo:I-sunat2, I-Samtols
I-3. Uhlalutyo lweThala leeNcwadi:
• faka uhlalutyo lobude, ukulandelwa kohlalutyo londe, njl;
• Izixhobo:I-Samtols;
4. Uhlalutyo loLuhlu:
• Olunye uhlalutyo lwepliphu, ukwakhiwa kwemfuza,Uqikelelo lweNovel gene, njl.
• Izixhobo:Umtya, gffcorpare, Gatk,Idayimane, I-Interprocan, kwayeHmmer.
I-5. Uhlalutyo lwamaxabiso
• Ukuvavanywa kweCorg, Uhlalutyo lobundlobongela, ukusebenzaukucebisa;
Iziphumo ezahlukeneyo zobubone;
RngeSegseq, Deseq2, ggplot2, Dexseq
Ireferensi
1. UKim, Daehwan et al. "Ulungelelwaniso lwe-genome olusekwe kwi-Geograme kwayeI-genobing kunye ne-suat2 ne-genot-genotype. "IndaloI-Biotechnology37 (2019): 907 - 915.
2. Mckenna, uAron et al. "I-Toolit yoHlaziyo lwe-genome: aInkqubo-sikhokelo yemapgeGuce yokuhlalutya i-DNA elandelayoIdatha yokulandelelana. "Uphando lwe-genome(9 (2010): 1297-303.
3. I-Li, heng et al. "Indlela yokulandelelana / yemephu yemephu kunyeI-Samtols. "I-Bioinformatics25 (2009): 2078 - 2079.
4. I-Per thoea, mihaela et al. "I-Striptie yenza ukuba iphuculweUkwakhiwa kwakhona kwe-transcripptome ukusuka kwi-RNA-Seq ifundwa. "IndaloI-Biotechnology33 (2015): 290-295.
5. Thanda, Michael I. Et Al. "Ukuqikelela okuphakathi kotshintsho lwemali kunyeUkusasazeka kwedatha ye-RNA-Seq nge-Deseq2. "GenomeIbhayoloji(2014): N. I-PG.
I-6. Eddy, Sean r ..I-PLOs I-biology7 (2011): N. I-PG.

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