I-gemivation ye-geomics
Izibonelelo zeNkonzo
●Iingcali ezibanzi zengcali kunye neerekhodi zokupapasha: Ngokuqokelelwa, i-bmkgene igqibe iiprojekthi ze-Ithemics ye-Ithemeds, kunye nempembelelo yefuthe elikhutshelweyo lafika kwi-900.
●Uhlalutyo olubanzi lwe-bioinformaticsIphakheji yohlalutyo iqulethe ezona zisibhozo zifunwayo, zibonelela kakuhle amanani okushicilela kunye nokuvumela ukutolikwa ngokulula kweziphumo
●Iqela le-biineform enobuchule kakhulu kunye nomjikelo wokuhlaziya omfutshane: Ngamava amnandi kuhlalutyo lwe-gememics othelekiso, iqela likaBMKgene lizalisekisa uhlalutyo lohlalutyo lobuqu kwixesha elifutshane
●Inkxaso yasemva kwentengiso:Ukuzibophelela kwethu kugqitha ngaphaya kokugqitywa kweprojekthi kunye nexesha lenkonzo yenkonzo yasemva kwenkonzo emva kwenkonzo. Ngeli xesha, sinikezela ngeprojekthi yokulandela iprojekthi, uncedo lokucombulula iingxaki, kunye ne-Q & Iiseshoni zokujongana nayo nayiphi na imibuzo enxulumene neziphumo.
Inkcazo yenkonzo
| Uqikelelwa ngexesha | Inani leentlobo | Hlaziywe |
| Iintsuku ezingama-30 zomsebenzi | 6 - 12 | Ukudityaniswa kwentsapho yeGene Ulwandiso lwentsapho yeGene kunye ne-chaseraction I-phylogenetic yomthi Uqikelelo lwexesha lokuphambukisa (iifosili zeforali ziyafuneka) Ixesha lokufakwa kwe-LTR (kwizityalo) I-genome yonke ye-genome (yezityalo) Uxinzelelo olukhethiweyo I-SyntenTey Recols |
I-bioinformatics ihlalutyo
● gene nosapho
● I-phylogenetics
● Ixesha lokuphambukisa
● Uxinzelelo olukhethiweyo
● Uhlalutyo lweSynten
IiMfuno kunye nokuHanjiswa
Iifoto zeSampula:
Izicubu okanye iDNA ye-genome kunye nendibano
Kwizicubu
| Iintlobo | Izicubu | Uphononongo | I-Pacbio Ccs |
| Isilwanyana | Izicubu ze-visceral | I-0.5 ~ 1 g | ≥ 3.5 g |
| Izicubu zemisipha | |||
| ≥ 5.0 g | |||
| ≥ 5.0 ml | |||
| Igazi laseMammalian | |||
| I-0.5 ml | |||
| Inkukhu / igazi lentlanzi | |||
| Tyala | Igqabi elitsha | 1 ~ 2 g | ≥ 5.0 g |
| Petal / stem | 1 ~ 2 g | ≥ 10.0 g | |
| Ingcambu / imbewu | 1 ~ 2 g | ≥ 20.0 g | |
| Iiseli | Iseli etyaliweyo | - | ≥ 1 x 108 |
Idatha
Iifayile ze-genome teendance (.Iza) kunye neefayile zenkcazo (.gff3) yeentlobo ezinxulumene kakhulu
Ukuhamba kwenkonzo
Uyilo lovavanyo
Ukuhanjiswa kwesampula
Ulwakhiwo lwethala leencwadi
Ukulandelelana
Uhlalutyo lwedatha
Iinkonzo zentengiso emva
*Iziphumo zeDemo eziboniswe apha zivela kwi-genomes ezipapashwe nge-biomarker teknoloji
I-1.LTR ifaka ixesha lokuqikelela ixesha: Umzobo oboniswe ukwabiwa kwe-bimodal okhethekileyo kwizihlandlo ze-LTR-RtR kwi-gene genome, kuthelekiswa nezinye iintlobo. Eyona nto iphambili kwi-piak yakutshanje isusela kwi-0.5 yezigidi kwiminyaka eyadlulayo.
Li guang et al.,Indalo yemfuza, 2021
I-2.phyylorlonlony kunye nohlalutyo lwentsapho ye-chalote (saseSechium Edule): Ngokuhlalutya iChoote kunye nezinye iintlobo ezili-13 kwi-Geles Intsapho yoSapho, iChayote yafunyanwa ihambelana kakhulu nenyoka. I-chaote ivela kwinyoka kwi-SURE nge-27-45 i-MyA kunye noPhicothi olupheleleyo (i-WGD) baqwalaselwa eChoote nge-25 ± 4 ye-MYA, eyisithili se-WGD kwi-CUCUICCEAEE.
Fu it al.,UPhando lwe-Horticul, 2021
3.Uhlalutyo lweSynnitey: Ezinye iintlobo ezinxulumene nePhytohurmones kuPhuculo lweziBonelelo zifunyenwe kwiChayote, inyoka yenyoka kunye ne-squash. Unxibelelwano phakathi kweChayote kunye ne-squash iphakamile kancinci kunelo phakathi kweChoote kunye nenyoka.
Fu it al.,UPhando lwe-Horticul, 2021
4.Uhlalutyo losapho: Uhlalutyo loSapho: I-Kegg Yourictions kwiGene loSapho kunye nokuThengisa kwi-G.Mavieri kunye ne-G.davidskoni i-bioynthes ye-biosynthesis ye-biosynthesis yandiswa.
Yang z et al.,I-BMC Biology, 2021
5.Welehlele genome genometion yohlalutyo: I-4DTV kunye nohlalutyo lwe-KS luboniswe yonke imisitho yokuphindwa kwe-genome. Iincopho ze-Intrassives eziboniswe imicimbi yokuphindaphindiweyo. Iincopho ze-inverpes eziboniswe yimicimbi ebhaliweyo. Uhlalutyo lubonakalisile ukuba ngokuthelekisa ezinye iintlobo ezintathu ezisondeleyo, o. I-Europaa iqhubekile kwi-propling enkulu kutshanje.
Rao g et al.,UPhando lwe-Horticul, 2021
Ityala leBMK
Phuma ngaphandle kwe-Prickle: Iincoko ze-seemic ezinxulunyaniswa nokuqhekeka okuqhelekileyo
Ipapashwe: Uphononongo lweSayensi kuZwelonke, 2021
Isicwangciso sokulandelelana:
'Ameva'(R.I-wichyan) I-Genome:
I-Approx. I-93 x Pacbio + malunga. I-90 X Nanopore + 267 X I-Mulmina
Iziphumo eziphambili
Umgangatho we-R.wichAinana genome genome yendlela efundwe ixesha elide, evelisa iNdibano ye-530.07 MB (ubungakanani be-Genome malunga ne-genometry kunye ne-525.5%). Inqaku le-Busco eliqikelelweyo yayingama-93.9%. Ukuthelekisa "iblush endala" (i-haploob), umgangatho kunye nokugqibelela kwale genome kuqinisekisiwe kwisiseko sokuchaneka kwendibano kunye ne-LTR (LOI = 20.03). I-R.wickoiana i-genome iqulethe i-32,674 ye-protein yeproteni.
Uhlalutyo oluhlangeneyo lwe-2, olubandakanya i-gemidcs ye-gemiction, i-Transreckiptotics, uhlalutyo lwe-Qtl, ityhila intetho ebalulekileyo phakathi kweR. Wichsis. Kwakhona, ukubonakalisa ukwahluka kweziphene ezinxulumene ne-qtl kusenokwenzeka ukuba zinxulunyaniswa ne-stetring patery.
I-anthes ye-gemiction ye-gemesics ye-geyer ye-anthe; i-rosa ingenamanzi kunye neqela lentsapho, ukwanda kwentsapho, ukwanda kohlalutyo, olunxulumene neempawu ezibalulekileyo kwi-roses. Ukwanda okwahlukileyo kwi-NAY kunye ne-TRE1 / i-FSS yosapho kwakusenokwenzeka ukuba inxulunyaniswa nokumelana nendawo emnyama.
Uhlalutyo lwe-genomival lokuthelekisa phakathi kwe-BT kunye ne-haploob ye-genoob.
Zhong, M., et al. "Rose ngaphandle kwe-Prickle: Iincoko ze-seemic zinxulunyaniswa nokutshintsha kwe-sumaptition"Uphononongo lweSayensi kuZwelonke, 2021; NWWAB092.
