Heatmap
Iyo Heatmap chishandiso inogamuchira matrix data faira sekuisa uye inobvumira vashandisi kusefa, kujaira uye kuunganidza data. Iyo yekutanga yekushandisa kesi yeheatmaps ndeye cluster ongororo yejini rekutaura nhanho pakati pemasampuli akasiyana.
Gene Annotation
Iyo Gene Annotation chishandiso inoita gene annotation zvichibva mukutevedzana kurongeka kwekuisa FASTA mafaera achipesana akasiyana dhatabhesi.
Yekushandisa Yekurongeka Kwenzvimbo Yekutsvaga (BLAST)
Iyo BLAST chishandiso ndeye BMKCloud yakabatanidzwa vhezheni yeNCBI BLAST uye inogona kushandiswa kuita mamwe mabasa uchishandisa data rakaiswa kuBMKCloud account.
CDS_UTR Prediction
Chishandiso cheCDS_UTR Prediction chakagadzirirwa kufanotaura matunhu ekukodha (CDS) uye asiri-makodha matunhu (UTR) mune yakapihwa zvinyorwa zvinoteedzana zvichibva pane BLAST zvawanikwa zvichipesana neanozivikanwa mapuroteni dhatabhesi uye ORF kufanotaura mhedzisiro.
Manhattan Plot
Iyo Manhattan Plot chishandiso inogonesa kuratidzwa kweyepamusoro sampuli kuyedza uye inowanzoshandiswa mugenome-wide association zvidzidzo (GWAS).
Circos Diagram
Iyo CIRCOS Dhiagiramu chishandiso inopa inonyatso tarisisa yemafambisirwo akaitwa genomic chimiro pane genome. Zvimiro zvakajairika zvinosanganisira kuwanda loci, SNPs, InDels, zvimiro uye kopi nhamba dzakasiyana.
Gene Ontology (GO) Kupfumisa
Iyo GO Enrichment chishandiso inopa mashandiro ekuvandudza ongororo. Iyo yekutanga software mune ichi chishandiso ndeye TopGO-Bioconductor package, iyo inosanganisira mutsauko wekutaura ongororo, GO enrichment ongororo uye kuona kwemhedzisiro.
Weighted Gene Co-expression Network Analysis (WGCNA)
WGCNA inzira inoshandiswa zvakanyanya yekuchera data yekutsvaga gene co-expression modules. Inoshanda kune akasiyana ekutaura dataset kusanganisira microarray uye NGS gene kutaura data.
InterProScan
Iyo InterProScan chishandiso inopa InterPro protein kutevedzana kuongororwa uye kurongedza.
ENDA KEGG Kupfumisa
Iyo GO KEGG Enrichment chishandiso dhizaini kugadzira iyo GO enrichment histogram, KEGG inopfumisa histogram uye KEGG kusimudzira nzira yakavakirwa pane yakapihwa gene seti uye inoenderana zvirevo.