Heatmap
Lub cuab yeej Heatmap lees txais cov ntaub ntawv matrix raws li cov tswv yim thiab tso cai rau cov neeg siv lim, normalize thiab pawg cov ntaub ntawv. Cov ntaub ntawv tseem ceeb siv rau cov phiaj xwm heatmaps yog kev tshuaj xyuas pawg ntawm qib qhia qib ntawm cov qauv sib txawv.
Gene Annotation
Gene Annotation cuab tam ua cov lus piav qhia cov noob raws li kev sib txuas ntawm cov ntaub ntawv FASTA tawm tsam ntau cov ntaub ntawv.
Basic Local Alignment Search Tool (BLAST)
Cov cuab yeej BLAST yog BMKCloud kev sib xyaw ua ke ntawm NCBI BLAST thiab tuaj yeem siv los ua haujlwm tib yam siv cov ntaub ntawv xa mus rau BMKCloud account.
CDS_UTR Kev twv ua ntej
Cov cuab yeej CDS_UTR Prediction yog tsim los kwv yees cov cheeb tsam coding (CDS) thiab cov cheeb tsam uas tsis yog-coding (UTR) hauv cov ntawv teev lus teev tseg raws li BLAST cov txiaj ntsig tawm tsam cov ntaub ntawv protein paub thiab ORF qhov kev kwv yees tau tshwm sim.
Manhattan Ploj
Manhattan Plot cuab yeej ua kom pom cov qauv kev sim siab thiab feem ntau yog siv hauv kev tshawb fawb genome-wide Association (GWAS).
Daim duab Circos
Cov cuab yeej CIRCOS Diagram muab kev pom tau zoo ntawm kev faib cov genomic li cas thoob plaws genome. Cov yam ntxwv feem ntau suav nrog ntau qhov chaw, SNPs, InDels, cov qauv thiab cov qauv sib txawv.
Gene Ontology (GO) Kev Txhim Kho
Cov cuab yeej GO Enrichment muab kev txheeb xyuas kev ua haujlwm zoo. Cov software tseem ceeb hauv cov cuab yeej no yog pob TopGO-Bioconductor, uas suav nrog kev txheeb xyuas qhov sib txawv, GO enrichment tsom xam thiab kev pom ntawm cov txiaj ntsig.
Weighted Gene Co-expression Network Analysis (WGCNA)
WGCNA yog ib txoj kev siv dav siv cov ntaub ntawv mining rau kev tshawb pom cov noob sib koom ua ke. Nws muaj feem xyuam rau ntau yam kev qhia cov ntaub ntawv suav nrog microarray thiab NGS gene qhia cov ntaub ntawv.
InterProScan
Lub cuab yeej InterProScan muab InterPro protein cov kev txheeb xyuas thiab kev faib tawm.
GO KEGG Enrichment
Cov cuab yeej GO KEGG Enrichment yog tsim los tsim kom muaj GO enrichment histogram, KEGG enrichment histogram thiab KEGG enrichment pathway raws li kev muab cov noob caj noob ces thiab cov ntsiab lus sib thooj.