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Cov khoom

De novo Bacterial Genome Assembly

kev 49

 

 

Peb muab kev pabcuam ua tiav cov kab mob genome, lav 0 qhov khoob. Qhov no yog ua tau los ntawm kev sib xyaw ua ke ntev-nyeem cov thev naus laus zis, xws li Nanopore thiab PacBio rau kev sib dhos thiab nyeem luv luv nrog Illumina rau kev sib dhos validation thiab kev kho qhov yuam kev ntawm ONT nyeem. Peb cov kev pabcuam muab cov haujlwm ua tiav bioinformatic los ntawm kev sib dhos, cov lus piav qhia ua haujlwm, thiab kev tshuaj xyuas bioinformatic siab heev, ua tiav cov hom phiaj tshawb fawb tshwj xeeb. Qhov kev pabcuam no ua rau muaj kev txhim kho ntawm cov ntaub ntawv siv genomes rau ntau yam kev tshawb fawb genetic thiab genomic. Tsis tas li ntawd, nws tsim lub hauv paus rau kev siv xws li kev ua kom zoo dua qub, kev tsim kho caj ces, thiab kev tsim kho tshuab microbial, kom ntseeg tau tias muaj kev ntseeg siab thiab tsis muaj qhov sib txawv ntawm cov ntaub ntawv genomic tseem ceeb rau kev nce qib kev tshawb fawb thiab biotechnological innovation.


Cov ntsiab lus ntawm kev pabcuam

Bioinformatics

Cov txiaj ntsig Demo

Cov ntawv tshaj tawm tshwj xeeb

Kev Pabcuam Nta

● Muaj ob txoj hauv kev xaiv los ntawm nyob ntawm qhov xav tau qib ntawm genome tiav.

● Draft Genome Option: Kev nyeem luv luv nrog Illumina NovaSeq PE150.

● Ua kom tiav 0 qhov sib txawv genome.

● Kev nyeem ntev ntev ntawm Nanopore PromethION 48 lossis PacBio Revio rau kev sib dhos genome.

● Kev nyeem luv luv ntawm Illumina NovaSeq rau genome validation thiab kho qhov yuam kev (Nanopore) los yog tsim kom muaj ib daim ntawv genome.

Kev Pabcuam Zoo

Zero-Gap Genome Guaranteed: Qhov no yog vim kev koom ua ke ntawm Illumina sequencing nrog ntev nyeem sequencing (Nanopore los yog PacBio).

Ua tiav Bioinformatics Workflow:Qhov no suav nrog kev sib dhos genome thiab kev twv ua ntej ntawm ntau lub ntsiab lus genomic, cov lus piav qhia txog cov noob caj noob ces, thiab kev pom genome xws li Circos zaj duab xis.

Kev txawj ntse: Nrog ntau tshaj 20,000 microbial genomes sib sau ua ke, BMKGENE coj ntau tshaj kaum xyoo ntawm kev paub, pab pawg kws tshuaj ntsuam xyuas zoo, cov ntsiab lus nthuav dav, thiab kev txhawb nqa zoo tom qab muag.

Kev them nyiaj yug tom qab muag:Peb qhov kev cog lus txuas ntxiv dhau qhov kev ua tiav nrog rau 3 lub hlis tom qab kev muag khoom. Nyob rau lub sijhawm no, peb muab cov phiaj xwm taug qab, kev pab daws teeb meem, thiab Q&A ntu los daws cov lus nug ntsig txog cov txiaj ntsig.

Muaj ntau lub tswv yim Sequencing muaj:Rau cov hom phiaj tshawb fawb sib txawv thiab cov kev xav tau ntawm genome tiav.

 

Service Specifications

Kev pabcuam

Sequence Strategy

Draft Genome

Illumina PE 150 100x

0 Gap Genome

Nanopor 100x + Illumina PE 150 100x

Or

Pacbio HiFi 30x + Illumina PE150 100x (yeem)

Cov Qauv Xav Tau:

 

Concentration (ng / μL)

Tag nrho cov nyiaj (µg)

Ntim (µL)

OB 260/280

OB 260/230

PacBio

≥ 20

≥1.2

≥ 20

1.7-2.2

≥1.0

Nanopor

≥40

≥ 2

≥ 20

1.7-2.2

1.0-3.0 Nws

Illumina

≥1

≥0.06

≥ 20

-

-

· Cov kab mob: ≥3.5x1010 hlwb

Kev Pabcuam Ua Haujlwm Flow

coj mus kuaj

Qauv xa tuaj

Kev npaj tsev qiv ntawv

Kev tsim kho tsev qiv ntawv

Sequencing

Sequencing

Cov ntaub ntawv tsom xam

Cov ntaub ntawv tsom xam

Kev pab cuam tom qab muag

Kev pab cuam tom qab muag


  • Yav dhau los:
  • Tom ntej:

  • 23.11.7-01 dr hab

    Xws li Kev Tshawb Fawb Hauv qab no:

    ● Sequencing Data Quality Control

    ● Genome Assembly

    ● Genome Component Analysis: Kev kwv yees ntawm CDS thiab ntau yam genomic

    ● Cov lus piav qhia ua haujlwm nrog ntau cov ntaub ntawv dav dav (GO, KEGG, thiab lwm yam) thiab cov ntaub ntawv siab heev (CARD, VFDB, thiab lwm yam)

    ● Genome Visualization

    Peb muab cov genome nyob rau hauv ib qho yooj yim nkag tau fasta hom ntawv thiab cov ntaub ntawv genome annotation (gff).

    Gene annotation – GO

    xoj 50Gene annotation - CAZY carbohydrates

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    Genome visualization - Circos zaj dab neeg

     

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    Tshawb nrhiav cov kev nce qib uas tau pab txhawb los ntawm BMKGene cov kev pabcuam kab mob genome los ntawm kev sau cov ntawv tshaj tawm.

     

    Dai, W. et al. (2023) 'Discovery of Bacteroides uniformis F18-22 as a Safe and Novel Probiotic Bacterium for the Treatment of Ulcerative Colitis from the Healthy Human Colon',International Journal of Molecular Sciences, 24(19), p. 14669. doi: 10.3390/IJMS241914669/S1.

    Kang, Q. et al. (2021) 'Multidrug-resistant Proteus mirabilis cais nqa blaOXA-1 thiab blaNDM-1 los ntawm cov tsiaj qus hauv Suav teb: nce kev noj qab haus huv rau pej xeem',Integrative Zoology, 16(6), pp. 798–809. doi: 10.1111/1749-4877.12510 ib.

    Wang, TT et al. (2017) 'Complete genome sequence of endophyte Bacillus flexus KLBMP 4941 qhia nws txoj kev loj hlob ntawm cov nroj tsuag txhawb nqa mechanism thiab caj ces hauv paus rau ntsev kam rau siab',Phau ntawv Journal of Biotechnology, 260, pp. 38–41. doi: 10.1016/J.JBIOTEC.2017.09.001.

    Wang, X. et al. (2021) 'Multiple-Replicon Resistance Plasmids of Klebsiella Mediate Extensive Dissemination of Antimicrobial Genes',Frontiers hauv Microbiology, 12, ib. 754931. doi: 10.3389/FMICB.2021.754931/BIBTEX.

    tau ib nqe lus

    Sau koj cov lus ntawm no thiab xa tuaj rau peb

    Xa koj cov lus rau peb: