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Nā huahana

ʻO ke Kaʻina Exome Ke kanaka holoʻokoʻa

Ua ʻike nui ʻia ʻo Human Whole exome sequencing (hWES) ma ke ʻano he kumu kūʻai kūpono a ikaika hoʻi no ka ʻike ʻana i nā mutation kumu o ka maʻi. ʻOiai he 1.7% wale nō o ka genome holoʻokoʻa, he hana koʻikoʻi nā exons ma o ka hōʻike pololei ʻana i ka ʻike o nā hana protein holoʻokoʻa. ʻO ka mea nui, i ka genome kanaka, ʻoi aku ma mua o 85% o nā mutations e pili ana i nā maʻi i hōʻike ʻia i loko o nā ʻāpana coding protein. Hāʻawi ʻo BMKGENE i kahi lawelawe holoʻokoʻa exome kanaka holoʻokoʻa a maʻalahi me ʻelua mau hoʻolālā hopu exon ʻokoʻa i loaʻa e hoʻokō i nā pahuhopu noiʻi like ʻole.


Nā kikoʻī lawelawe

Nā hopena hōʻike

Nā hiʻohiʻona lawelawe

● Loaʻa nā panela exome ʻelua ma muli o ka hoʻonui ʻia ʻana o ka pahuhopu me nā probes: Sure Select Human All Exon v6 (Agilent) a me xGen Exome Hybridization Panel v2 (IDT).

● Ke kaʻina hana ma Illumina NovaSeq.

● ʻO ka paipu bioinformatic i kuhikuhi ʻia i ka nānā ʻana i nā maʻi a i ʻole ka nānā ʻana i ka tumora.

Pono lawelawe

Kuhi ʻia i ka ʻāpana hoʻoheheʻe protein: Ma ka hopu ʻana a me ka hoʻonohonoho ʻana i nā ʻāpana coding protein, hoʻohana ʻia ka hWES e hōʻike i nā ʻano like ʻole e pili ana i ke ʻano o ka protein.

Kūʻai maikaʻi:Hāʻawi ka hWES ma kahi o 85% o nā hoʻololi e pili ana i ka maʻi kanaka mai 1% o ka genome kanaka.

Pono Kiʻekiʻe: Me ka hohonu o ke kaʻina hana kiʻekiʻe, hoʻomaʻamaʻa ka hWES i ka ʻike ʻana i nā ʻano like ʻole a me nā ʻano like ʻole me nā alapine haʻahaʻa ma mua o 1%.

Hoʻomalu maikaʻi loa: Hoʻokō mākou i ʻelima mau kumu mana ma nā pae āpau, mai ka laʻana a me ka hoʻomākaukau ʻana i ka waihona a hiki i ka sequencing a me ka bioinformatics. Mālama kēia mākaʻikaʻi ʻana i ka hāʻawi ʻana i nā hopena kiʻekiʻe mau.

ʻIkepili Bioinformatics piha: ʻO kā mākou pipeline ma mua o ka ʻike ʻana i nā ʻano like ʻole i ka genome reference, no ka mea, ua hoʻokomo ʻia ka loiloi holomua i hoʻolālā ʻia e hoʻoponopono pono i nā nīnau noiʻi e pili ana i nā ʻano genetic o nā maʻi a i ʻole ka nānā ʻana i ka tumor.

Kākoʻo ma hope o ke kūʻai ʻana:ʻO kā mākou kūpaʻa e ʻoi aku ma mua o ka hoʻopau ʻana o ka papahana me kahi 3 mau mahina ma hope o ke kūʻai aku ʻana. I kēia manawa, hāʻawi mākou i ka hahai ʻana o ka papahana, kōkua hoʻoponopono, a me nā hālāwai Q&A e hoʻoponopono i nā nīnau pili i nā hopena.

Hōʻike Laʻana

Papahana Hopu Exon

Hoʻolālā Sequencing

Manaʻo ʻia ka ʻikepili hoʻopuka

Pono e koho i ke kanaka All Exon v6 (Agilent)

a i ʻole xGen Exome Hybridization Panel v2 (IDT)

 

ʻO Illumina NovaSeq PE150

5 -10 Gb

No nā ma'i mendelian/ma'i kaka'ikahi: > 50x

No nā laʻana tumora: ≥ 100x

Nā Koina Laʻana

ʻAno Laʻana

 

 Ka nui(Qubit® )

 

Hoʻopaʻa ʻana 

Volume

 

 

 Maʻemaʻe (NanoDrop™ )

 

DNA Genomic

 

≥ 50 ng
≥ 6 ng/μL
≥ 15 μL
 
OD260/280=1.8-2.0
 
ʻaʻohe degradation, ʻaʻohe haumia

 

Bioinformatics

WES_BI holo hana_Ma'i-01

ʻO ka loiloi bioinformatic o nā hōʻailona hWES-maʻi me:

● Hoʻokaʻina ʻikepili QC

● Hōʻike Genome Alignment

● Hoʻomaopopo i nā SNP a me InDels

● Hōʻike no nā SNP a me InDels

WES_BI holo hana_Tumor-01

ʻO ka loiloi bioinformatic o nā laʻana tumor e pili ana:

● Hoʻokaʻina ʻikepili QC

● Hōʻike Genome Alignment

● Identification of SNPs, InDels and somatic variations

● Hoʻomaopopo i nā ʻano ʻano germline

● Kānāwai pūlima hoʻololi

● Ka ʻike ʻana i nā genes drive e pili ana i nā hoʻololi ʻana o ka loaʻa ʻana o ka hana

● Hōʻike hoʻololi i ka pae o ka maʻalahi o ka lāʻau

● Heterogeneity analysis - helu o ka maʻemaʻe a me ka ploidy

Holo Hana Hana

hāʻawi laʻana

Hāʻawi laʻana

Hoʻokolohua hoʻokele

Ka unuhi ʻana o DNA

Hoʻomākaukau hale waihona puke

Kūkulu hale waihona puke

Ke kaʻina ʻana

Ke kaʻina ʻana

ʻIkepili ʻikepili

ʻIkepili ʻikepili

数据上传-01

Hāʻawi ʻikepili

Mahope o ke kuai ana

Nā lawelawe ma hope o ke kūʻai aku


  • Mua:
  • Aʻe:

  • ʻIkepili QC - Heluhelu o Exome hopu

     

    wps_doc_22

     

    ʻIke ʻokoʻa - InDels

    图片36

    ʻIke holomua: ʻike a me ka hāʻawi ʻana i nā SNP / InDels deleterious - Circos plot

     

    图片37

    Nānā Tumor: ʻike a me ka hāʻawi ʻana i nā mutations somatic - Circos plot

     

    图片38

     

    Ka nānā 'ana i ke koko: clonal lineages

     

    图片39

     

    kiʻi i kahi ʻōlelo

    E kākau i kāu leka ma aneʻi a hoʻouna mai iā mākou

    E hoʻouna i kāu leka iā mākou: